PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6658_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 596aa    MW: 67921.8 Da    PI: 5.0476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6658_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10318385755
                 HHHHHHHHHHHHHHHHHHCTSCC.C.....................TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.as..................kapskKlsKaeiLekAveYIksLq 55 
                  +ErrRR+++N+++  Lr+l+P                         + Kl+ a+iL  A++Y+k+Lq
  RrC6658_p1 318 LAERRRRKKLNDRLYALRSLVPRiTKvyicgftlngfvslsetsFFVAWKLDRASILGDAINYVKELQ 385
                 68*********************666**************8887555679*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-1811149IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.63E-15303397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-10310387No hitNo description
PROSITE profilePS5088814.557311384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11317390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-15318398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-8318385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MESSSMQNLL EKLRPLVGAR AWDYCVLWRL NEDQRFVKWM GCCCGGTQLI EENGTEGFSF  60
EGCRDVMFHH PRTKSCDFLA HLPSSIPLDS GIYAETLLTN QTSWLSESSE PGFMQETICT  120
RVLIPIPGGL VELFATRHVA EDQNVVDFVM GNCNMLMDET VTINMMVADE VESKPYGMLS  180
GDIHQKGSKD EEMMNLTSPY DISTDQMRLN FLPQMSEYDA QQHLKVKSDY HHHQELGYLQ  240
ENGSKEMMGM NPFSTEDGMS VMGEPSLLVN EQQVGNDKEM NENGRLDTGS DCSDQIDDED  300
DPKYKKKTGK HSQAKNLLAE RRRRKKLNDR LYALRSLVPR ITKVYICGFT LNGFVSLSET  360
SFFVAWKLDR ASILGDAINY VKELQNEAKE LQDELEENSE TEDGSNRQQV GMSLNGTVVT  420
GFHPGLSCNS NVPSLKQDVD LENANDKGQE MEPQVDVAQL DGREFFVKVI CEYKPGGFTR  480
LMEALDSLGL EVTNANTTRF LSLVSNVFKV EKTDSEMVPA EHVRNSLLEI TRNTSRRWHD  540
DQMATGSMQN EKNEVDYQHY DDHHHHGDHH HLHDPRMNHS AHHHHHHQHI SHYQNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304325KKKTGKHSQAKNLLAERRRRKK
2319326ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5119910.0AJ511991.1 Brassica napus mRNA for bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724907.10.0PREDICTED: transcription factor ABORTED MICROSPORES
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLA0A078H1S90.0A0A078H1S9_BRANA; BnaA07g03340D protein
STRINGBra002004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein